Stem-loop cca-MIR6114

Accession

MI0021102

Description

Cynara cardunculus cca-MIR6114 precursor miRNA

Literature search

1 open access papers mention cca-MIR6114
(2 sentences)

Sequence

uauuggUGAAAGGAAUCAUGAACGUGAggaugcuuugguugugucgauuuucucguguauuucuuuacacaagauaagaggccaacuUCACGUCCAUUGUCCCUUUCAcuacugc
...((((((((((.((.(((.((((((.........(((((.(((..((.(((.(((((......))))).))).))..)))))))))))))).))).)).))))))))))....

Structure

-uau          A  C   A      ggaugcuuu     u   ga  u   c     uu 
    uggUGAAAGG AU AUG ACGUGA         gguug guc  uu ucu gugua  u
    |||||||||| || ||| ||||||         ||||| |||  || ||| |||||   
    aucACUUUCC UG UAC UGCACU         ucaac cgg  aa aga cacau  c
cguc          C  U   C      ---------     -   ag  u   a     uu 

Annotation confidence Low

Genome context

Unknown

Mature cca-miR6114-5p

• Accession: MIMAT0024553
• Description: Cynara cardunculus cca-miR6114-5p mature miRNA
• Sequence: 7 - UGAAAGGAAUCAUGAACGUGA - 27
• Evidence: experimental ; Illumina [1]

Mature cca-miR6114-3p

• Accession: MIMAT0024554
• Description: Cynara cardunculus cca-miR6114-3p mature miRNA
• Sequence: 88 - UCACGUCCAUUGUCCCUUUCA - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41