Stem-loop cca-MIR6116

Accession

MI0021109

Description

Cynara cardunculus cca-MIR6116 precursor miRNA

Sequence

gaauagcuCAUGCUUGUGAUCAAAUGAUGgugaagcacuuaagcuucauuguaaauaccauaaccaauucccuaugaaaagguaauuguggccuagaaucacucauccugucauccauccucaugcaucaaacugguuaagugcuucaccaUCAUUUGAUCACAAGCAUGAGcuauuca
((((((((((((((((((((((((((((((((((((((((((.(.....((((...........(((((.(((......))).)))))((((...((........))..))))..........)))).......).)))))))))))))))))))))))))))))))))))))))))).

Structure

-                                          g --uucau    ------------------------aauaccauaac     c   au 
 gaauagcuCAUGCUUGUGAUCAAAUGAUGgugaagcacuuaa c       ugua                                   caauu ccu  g
 |||||||||||||||||||||||||||||||||||||||||| |       ||||                                   ||||| |||   
 cuuaucGAGUACGAACACUAGUUUACUaccacuucgugaauu g       acgu                                   guuaa gga  a
a                                          g ucaaacu    acuccuaccuacuguccuacucacuaagauccggu     u   aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6116-5p

• Accession: MIMAT0024562
• Description: Cynara cardunculus cca-miR6116-5p mature miRNA
• Sequence: 9 - CAUGCUUGUGAUCAAAUGAUG - 29
• Evidence: experimental ; Illumina [1]

Mature cca-miR6116-3p

• Accession: MIMAT0024563
• Description: Cynara cardunculus cca-miR6116-3p mature miRNA
• Sequence: 152 - UCAUUUGAUCACAAGCAUGAG - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41