Stem-loop cca-MIR6118

Accession

MI0021111

Description

Cynara cardunculus cca-MIR6118 precursor miRNA

Literature search

1 open access papers mention cca-MIR6118
(1 sentences)

Sequence

agcugcUGGAAUUGGGUGCUUCGGAAGAaaugaaaucgauucauaucaucaccguugauugaucuauggauugcaucgguugauuuuuuUUCCGAGGCCACCCAUUCCAACgucuc
((.((.((((((.(((((((((((((((((...((((((((((((((((((....))).)))..)))))).....))))))....)))))))))))).))))))))))).)).)).

Structure

-  c  c      U     -            -uga      -----      --   -   c 
 ag ug UGGAAU GGGUG CUUCGGAAGAaa    aaucga     uucaua  uca uca c
 || || |||||| ||||| ||||||||||||    ||||||     ||||||  ||| |||  
 uc gC ACCUUA CCCAC GGAGCCUUuuuu    uuggcu     agguau  agu agu g
c  u  A      -     C            uuag      acguu      cu   u   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6118-5p

• Accession: MIMAT0024565
• Description: Cynara cardunculus cca-miR6118-5p mature miRNA
• Sequence: 7 - UGGAAUUGGGUGCUUCGGAAGA - 28
• Evidence: experimental ; Illumina [1]

Mature cca-miR6118-3p

• Accession: MIMAT0024566
• Description: Cynara cardunculus cca-miR6118-3p mature miRNA
• Sequence: 90 - UUCCGAGGCCACCCAUUCCAAC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41