Stem-loop bta-mir-149

Accession

MI0021115

Description

Bos taurus bta-mir-149 precursor miRNA mir-149

Gene
family

RF00829; mir-149

Literature search

4 open access papers mention bta-mir-149
(6 sentences)

Sequence

1999 reads, 39 reads per million, 66 experiments

gccggcgcccaggcUCUGGCUCCGUGUCUUCACUCCCguguguguccaccgaggGAGGGAGGGACGGGGGCUGUGCuggggcggccggga
.(((((((((.(((.(.(.((((((.(((((.(((((..(((....)))...)))))))))).)))))).).).))).)))).)))))..

Structure

-g     -    a   U U G      G     A     -gu   u 
  ccggc gccc ggc C G CUCCGU UCUUC CUCCC   gug g
  ||||| |||| ||| | | |||||| ||||| |||||   |||  
  ggccg cggg uCG G C GGGGCA GGAGG GAGgg   cac u
ag     g    g   U U G      G     -     agc   c 

Annotation confidence High

Genome context

chr3: 120921662-120921751 [+]

Mature bta-miR-149-5p

• Accession: MIMAT0024570
• Description: Bos taurus bta-miR-149-5p mature miRNA
• Sequence: 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
• Evidence: experimental ; Illumina [1-2]

Mature bta-miR-149-3p

• Accession: MIMAT0024571
• Description: Bos taurus bta-miR-149-3p mature miRNA
• Sequence: 55 - GAGGGAGGGACGGGGGCUGUGC - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026


2. PubMed ID: 22298343
   Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
   Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
   J Cell Biochem (2012) 113:2098-2111