Stem-loop lus-MIR160a

Accession

MI0021157

Description

Linum usitatissimum lus-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention lus-MIR160a
(9 sentences)

Sequence

aauggaacugaauggaguugauuacgguuugccgUGCCUGGCUCCCUGUAUGCCAucugcaagaccucauuaacagaguuuugguggggcuugcuggauggcguacgaggagccaugcaugcuuuuuuaauucucaacccaccaucaacuccaucaguuccauu
(((((((((((.((((((((((...((.(((.(((((.(((((((.(((((((((((((((((.(((((((((.......)))))))))))))).)))))))))))).))))))).))))).............))).))...)))))))))))))))))))))

Structure

           a          uac  u   ------------c     C       C            -     a         ca 
aauggaacuga uggaguugau   gg uug             cgUGC UGGCUCC UGUAUGCCAucu gcaag ccucauuaa  g
||||||||||| ||||||||||   || |||             ||||| ||||||| |||||||||||| ||||| |||||||||  a
uuaccuugacu accucaacua   cc aac             guacg accgagg gcaugcgguagg cguuc ggggugguu  g
           -          cca  c   ucuuaauuuuuuc     u       a            u     -         uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160a

• Accession: MIMAT0027137
• Description: Linum usitatissimum lus-miR160a mature miRNA
• Sequence: 35 - UGCCUGGCUCCCUGUAUGCCA - 55
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161