Stem-loop lus-MIR169f

Accession

MI0021168

Description

Linum usitatissimum lus-MIR169f precursor miRNA

Literature search

2 open access papers mention lus-MIR169f
(10 sentences)

Sequence

ugauuuugcgaaguagaacauaggccugagaugaagacggagagagcgugguuCAGCCAAGGAUGACUUGCCGGacggcuagcuccgguugucagcuccaucgucggcaaguuguucuuggcuacauugcgcucacuuguucucauuucagaccucucuauguucucccauuuggcaacuuca
(((..((((.((((((((((((((.(((((((((.((..(((.(((((((((..(((((((((((((((((((.((((..((((.........))))...)))))))))))))))))))))))..))))))))).)))..))))))))))).)))....)))))))...)))).))))..)))

Structure

   uu    g    ---       ----   c         a  cg   a         uC                   G    -cu    ccg 
uga  uugc aagu   agaacau    agg cugagauga ga  gag gagcguggu  AGCCAAGGAUGACUUGCCG acgg   agcu   g
|||  |||| ||||   |||||||    ||| ||||||||| ||  ||| |||||||||  ||||||||||||||||||| ||||   ||||   u
acu  aacg uuua   ucuugua    ucc gacuuuacu cu  uuc cucgcguua  ucgguucuuguugaacggc ugcu   ucga   u
   uc    g    ccc       ucuc   a         -  ug   a         ca                   -    acc    cug 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR169f

• Accession: MIMAT0027148
• Description: Linum usitatissimum lus-miR169f mature miRNA
• Sequence: 54 - CAGCCAAGGAUGACUUGCCGG - 74
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161