Stem-loop lus-MIR399f

Accession

MI0021177

Description

Linum usitatissimum lus-MIR399f precursor miRNA

Literature search

2 open access papers mention lus-MIR399f
(19 sentences)

Sequence

gggucugcuagcuagcugcaugaaugaaucacugggcuaauacuucuuuggcaguaguugaaaggcuaaguaguuggucaguugguuguuugcaccaauugccagacacggugccguuucaaacaaacUGCCAAAGGAGAUUUGCCCAGccuuucagcucaugcauacaaaagucaucaucccc
(((..((...(((...(((((((.((((...((((((.(((.(((((((((((((..(((((((((...((..((((.((((((((.......))))))))))))..))...))).))))))....)))))))))))))))).))))))...))))..)))))))......)))...)).))).

Structure

-   uc  cua   ---agc       -a    uca      u   a             --ag      -   uaa  ag    u        ug 
 ggg  ug   gcu      ugcauga  ugaa   cugggc aau cuucuuuggcagu    uugaaa ggc   gu  uugg caguuggu  u
 |||  ||   |||      |||||||  ||||   |||||| ||| |||||||||||||    |||||| |||   ||  |||| ||||||||  u
 ccc  ac   uga      acguacu  acuu   GACCCG UUA GAGGAAACCGUca    aacuuu ccg   ca  gacc guuaacca  u
c   -u  uac   aaacau       cg    ucc      U   -             aaca      g   ugg  ca    -        cg 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR399f

• Accession: MIMAT0027157
• Description: Linum usitatissimum lus-miR399f mature miRNA
• Sequence: 129 - UGCCAAAGGAGAUUUGCCCAG - 149
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161