Stem-loop lus-MIR398b

Accession

MI0021180

Description

Linum usitatissimum lus-MIR398b precursor miRNA

Literature search

3 open access papers mention lus-MIR398b
(13 sentences)

Sequence

ucaugucucUGUGUUCUCAGGUCACCCCUcugggucaccuuauuucuacauuuccaucucaaauucuauuuucuuauauuuauucgggagcgacguugagacacauacguucucgaaagauaucuaaacaaauaugguuagauccagaggggugcaaccugaaaacacagacgacgga
((.((((((((((((.(((((((((((((((((((((((.(((((...............(((......)))...((((((.(((((((((((.((......)).).))))))))))))))))......))))).)))..))))))))))))))..)))))).)))))))).))))))

Structure

  a    -        C      --              --   u     cuacauuuccaucucaaauucuauuuucuu      a          - c  ug 
uc uguc ucUGUGUU UCAGGU  CACCCCUcuggguc  acc uauuu                              auauuu uucgggagcg a gu  a
|| |||| |||||||| ||||||  ||||||||||||||  ||| |||||                              |||||| |||||||||| | ||   
ag gcag agacacaa agucca  guggggagaccuag  ugg auaaa                              uauaga aagcucuugc u ca  g
  -    c        a      ac              au   u     ------------------------caaauc      -          a a  ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR398b

• Accession: MIMAT0027160
• Description: Linum usitatissimum lus-miR398b mature miRNA
• Sequence: 10 - UGUGUUCUCAGGUCACCCCU - 29
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161