Stem-loop lus-MIR160d

Accession

MI0021191

Description

Linum usitatissimum lus-MIR160d precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

2 open access papers mention lus-MIR160d
(6 sentences)

Sequence

gcuagcuaagguggcggugguggguggugguggugguguugaguugaguguguaauggcugugugugcgUGCCUGGCUCCCUGUAUGCCAuuugcaagagcucaucaacacaguuuugauggggcuugguggauggcguacugaguagccaugcaugcuuauaacuaccauuaacuccuccauucauuuauccccaaccaaccauucccuuccuuccuacuggcaccaaugcugc
((.(((...((((.((((((.(((.((.(((((((((..(((((.(((.(.(((((((..(((((.((((((.((((((.(.(((((((((((((..(((((((((((.......))))).)))))).))))))))))))).).).))))).)))))).))).))..))))).)).)))).)))))..........))).)))))).))..)))..)))))).))))...)))))

Structure

  u   uaa    g      -u   -u  u      -   --------gu     u   u u  -     cu  -   u      C     - C U             aa      -     ca 
gc agc   ggug cggugg  ggg  gg gguggu ggu          ugagu gag g gu aaugg  gu gug gcgUGC UGGCU C C GUAUGCCAuuugc  gagcuc aucaa  c
|| |||   |||| ||||||  |||  || |||||| |||          ||||| ||| | || |||||  || ||| |||||| ||||| | | |||||||||||||  |||||| |||||  a
cg ucg   ccac gucauc  ucc  cc uuacca cca          acuua cuc c ca uuacc  ca uau cguacg accga g g caugcgguaggug  uucggg uaguu  g
  -   uaa    g      cu   uu  c      a   accccuauuu     c   - u  a     au  a   u      u     u a u             -g      g     uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160d

• Accession: MIMAT0027171
• Description: Linum usitatissimum lus-miR160d mature miRNA
• Sequence: 70 - UGCCUGGCUCCCUGUAUGCCA - 90
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161