Stem-loop lus-MIR393b

Accession

MI0021238

Description

Linum usitatissimum lus-MIR393b precursor miRNA

Literature search

2 open access papers mention lus-MIR393b
(23 sentences)

Sequence

ugaugaacuaacuuagugcagauugagaguUCCAAAGGGAUCGCAUUGAUCuaaucaugaugauauagagagcaucuuccaccagcuaauuaguuagaucaugcgaucccuuucgaauucuccaucucugcuucuaaacuccacauca
(((((.......((((.(((((..((((((((.(((((((((((((.((((((((...((((..........))))................))))))))))))))))))))).))))))))....)))))..))))......)))))

Structure

     aacuaac    -u     --uu        C             U        -------------cau    auau 
ugaug       uuag  gcaga    gagaguUC AAAGGGAUCGCAU GAUCuaau                gaug    a
|||||       ||||  |||||    |||||||| ||||||||||||| ||||||||                ||||     
acuac       aauc  cgucu    cucuuaag uuucccuagcgua cuagauug                cuac    g
     -accuca    uu     cuac        c             -        auuaaucgaccaccuu    gaga 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR393b

• Accession: MIMAT0027218
• Description: Linum usitatissimum lus-miR393b mature miRNA
• Sequence: 31 - UCCAAAGGGAUCGCAUUGAUC - 51
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161