Stem-loop ptr-mir-3154

Accession

MI0021269

Description

Pan troglodytes ptr-mir-3154 precursor miRNA

Sequence

ggccggcccccuccucaggccccuccuucucagccccagcucccgcucaccccugccacgucaaaggaggCAGAAGGGGAGUUGGGAGCagagaggggaccacgggcug
((((((((.........))))..((((((((.((((((((((((.((.....(((((.(......)..))))).)))))))))))).)).))))))))......)))).

Structure

-    ggcccccuccucaggcccc        a  -          g  caccc     -a gu 
 ggcc                   uccuucuc gc cccagcuccc cu     cugcc  c  c
 ||||                   |||||||| || |||||||||| ||     |||||  |   
 ucgg                   ggggagag CG GGGUUGAGGG GA     GACgg  g  a
g    -------------gcacca        a  A          -  ----A     ag aa 

Annotation confidence Not enough data

Genome context

chr9: 106385956-106386064 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-3154

Mature ptr-miR-3154

• Accession: MIMAT0024608
• Description: Pan troglodytes ptr-miR-3154 mature miRNA
• Sequence: 71 - CAGAAGGGGAGUUGGGAGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22454130
   Transcription factors are targeted by differentially expressed miRNAs in primates
   "Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J"
   "Genome Biol Evol (2012) 4:552-564