Stem-loop pgi-MIR2118

Accession

MI0021292

Description

Panax ginseng pgi-MIR2118 precursor miRNA

Literature search

1 open access papers mention pgi-MIR2118
(22 sentences)

Sequence

gagaggaguaagugggaaagggagauagaucuagaugaaguuguuuggaugggugauuuggaaagaaaaguuuuguguagauacuugaaagaaauucUUUCCUAUUCCACCCAUCCCAUugauuuccucuggcuccuccccuucccuuucuuuuccuguu
((.(((((.(((.(((((.(((((...((.(((((.(((((((...(((((((((....((((((((...((((..((....))..))))....)))))))).....)))))))))...))))))).))))).))))))).)))))...)))))))).))

Structure

  g     u   --u     a     aua  u     u       uuu         -auuu        -aag    gu  a 
ga aggag aag   gggaa gggag   ga cuaga gaaguug   ggaugggug     ggaaagaa    uuuu  gu g
|| ||||| |||   ||||| |||||   || ||||| |||||||   |||||||||     ||||||||    ||||  ||  
uu uccuu uuc   cccuu cccuc   cu ggucu cuuuagu   CCUACCCAC     CCUUUcuu    aaag  ca a
  g     -   uuu     c     ---  c     c       UAC         CUUAU        aaag    uu  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR2118

• Accession: MIMAT0027240
• Description: Panax ginseng pgi-miR2118 mature miRNA
• Sequence: 98 - UUUCCUAUUCCACCCAUCCCAU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385