Stem-loop nta-MIR156a

Accession

MI0021319

Description

Nicotiana tabacum nta-MIR156a precursor miRNA

Literature search

8 open access papers mention nta-MIR156a
(26 sentences)

Sequence

865155 reads, 138274.0 reads per million, 46 experiments

augugauaggUGACAGAAGAGAGUGAGCACacaugguguuuucuugcauaugauauacuugaaccuaugcguGCUCACUGCUCUAUCUGUCACCcccacacucu
.((((...((((((((((((((((((((((.(((((.((((...................))))))))).))))))))).)))).)))))))))..))))....

Structure

---a    aua         -    -         a     u    ucuugcau 
    ugug   ggUGACAGA AGAG AGUGAGCAC caugg guuu        a
    ||||   ||||||||| |||| ||||||||| ||||| ||||        u
    acac   CCACUGUCU UCUC UCACUCGug guauc caag        g
ucuc    -cc         A    G         c     -    uucauaua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR156a-5p

• Accession: MIMAT0024629
• Description: Nicotiana tabacum nta-miR156a-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR156a-3p

• Accession: MIMAT0058026
• Description: Nicotiana tabacum nta-miR156a-3p mature miRNA
• Sequence: 73 - GCUCACUGCUCUAUCUGUCACC - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28