Stem-loop nta-MIR156c

Accession

MI0021321

Description

Nicotiana tabacum nta-MIR156c precursor miRNA

Literature search

8 open access papers mention nta-MIR156c
(25 sentences)

Sequence

875444 reads, 137618.0 reads per million, 46 experiments

agaaucaagacUGACAGAAGAGAGUGAGCACacgcaggcaauuguauagagauuauauuacugucauuugcgugUGCUCACUUCUCUUGCUGUCAUCUcucucuaua
(((....(((.(((((((((((((((((((((((((((((...(((((.....)))))...))))...))))))))))))).)))))).)))))))))...)))...

Structure

---   auca   c      -      -             ---    auu     g 
   aga    aga UGACAG AAGAGA GUGAGCACacgca   ggca   guaua a
   |||    ||| |||||| |||||| |||||||||||||   ||||   ||||| g
   ucu    UCU ACUGUC UUCUCU CACUCGUgugcgu   cugu   uauau a
aua   -cuc   -      G      U             uua    cau     u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR156c-5p

• Accession: MIMAT0024631
• Description: Nicotiana tabacum nta-miR156c-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR156c-3p

• Accession: MIMAT0058028
• Description: Nicotiana tabacum nta-miR156c-3p mature miRNA
• Sequence: 75 - UGCUCACUUCUCUUGCUGUCAUCU - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28