Stem-loop nta-MIR156d

Accession

MI0021322

Description

Nicotiana tabacum nta-MIR156d precursor miRNA

Literature search

7 open access papers mention nta-MIR156d
(24 sentences)

Sequence

1061274 reads, 192258.0 reads per million, 46 experiments

aaaagggaggUGACAGAAGAGAGUGAGCACagaugguguuuucuugcauugauauauguauaugcuugaagcuaugcguGCUCACUCUCUAUCUGUCACCcccaccacuc
....(((.((((((((((((((((((((((..(((((...(((..((((..((....))..))))..))))))))..))))))))))))).)))))))))))).......

Structure

---aaaa   a         -             ag     guu   uu    ug  a 
       ggg ggUGACAGA AGAGAGUGAGCAC  auggu   uuc  gcau  au u
       ||| ||||||||| |||||||||||||  |||||   |||  ||||  ||  
       ccc CCACUGUCU UCUCUCACUCGug  uaucg   aag  cgua  ug a
cucacca   -         A             cg     ---   uu    ua  u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR156d-5p

• Accession: MIMAT0024632
• Description: Nicotiana tabacum nta-miR156d-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR156d-3p

• Accession: MIMAT0058029
• Description: Nicotiana tabacum nta-miR156d-3p mature miRNA
• Sequence: 80 - GCUCACUCUCUAUCUGUCACC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28