Stem-loop nta-MIR156g

Accession

MI0021325

Description

Nicotiana tabacum nta-MIR156g precursor miRNA

Literature search

7 open access papers mention nta-MIR156g
(26 sentences)

Sequence

6326500 reads, 27188.0 reads per million, 46 experiments

gugagauuguUGACAGAAGAUAGAGAGCACagaugaugaucaugcugcuaaaucugggauuggagagggcacugaaucaauuaaacugcaaaaaaaaaaagcaucucaauucauuuguGCUCUCUAUGCUUCCGUCAUCaccuucaccg
(((((..((.((((.(((((((((((((((((((((((((((.(.((((...(((......)))...))))))).)))).......(((...........))).......))))))))))))))))).)))).)))).))..)))))..

Structure

--     au  u    A    -                 -------------------------------    -  u c    aaa   gg 
  gugag  ug UGAC GAAG AUAGAGAGCACagauga                               ugau ca g ugcu   ucu  g
  |||||  || |||| |||| |||||||||||||||||                               |||| || | ||||   |||   
  cacuu  aC ACUG CUUC UAUCUCUCGuguuuacu                               acua gu c acgg   agg  a
gc     cc  U    C    G                 uaacucuacgaaaaaaaaaaacgucaaauua    a  - -    gag   uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR156g-5p

• Accession: MIMAT0024635
• Description: Nicotiana tabacum nta-miR156g-5p mature miRNA
• Sequence: 11 - UGACAGAAGAUAGAGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR156g-3p

• Accession: MIMAT0058032
• Description: Nicotiana tabacum nta-miR156g-3p mature miRNA
• Sequence: 119 - GCUCUCUAUGCUUCCGUCAUC - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28