Stem-loop nta-MIR156j

Accession

MI0021328

Description

Nicotiana tabacum nta-MIR156j precursor miRNA

Literature search

7 open access papers mention nta-MIR156j
(24 sentences)

Sequence

13393214 reads, 55075.0 reads per million, 46 experiments

ugacaauuguUGACAGAAGAUAGAGAGCACuaaugaugauaugcuaaguaaauguaggggcaaaagcaucucaauucauuuguGCUCUCUAUGCUUCUGUCAUCaccuucggcca
.......((.((((((((((((((((((((.((((((((.(((((...................))))).)))..))))).))))))))))).))))))))).))..........

Structure

---ugacaau  u         -           u     --   u     aaguaaau 
          ug UGACAGAAG AUAGAGAGCAC aauga  uga augcu        g
          || ||||||||| ||||||||||| |||||  ||| |||||        u
          aC ACUGUCUUC UAUCUCUCGug uuacu  acu uacga        a
accggcuucc  U         G           u     ua   c     aaacgggg 

Annotation confidence High

Genome context

Unknown

Mature nta-miR156j-5p

• Accession: MIMAT0024638
• Description: Nicotiana tabacum nta-miR156j-5p mature miRNA
• Sequence: 11 - UGACAGAAGAUAGAGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR156j-3p

• Accession: MIMAT0058035
• Description: Nicotiana tabacum nta-miR156j-3p mature miRNA
• Sequence: 84 - GCUCUCUAUGCUUCUGUCAUC - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28