Stem-loop nta-MIR159

Accession

MI0021329

Description

Nicotiana tabacum nta-MIR159 precursor miRNA

Literature search

11 open access papers mention nta-MIR159
(34 sentences)

Sequence

1359479 reads, 77575.0 reads per million, 46 experiments

uuugagaguggagcuccuugaaguccaacagaggaucuaacagguaagauugAGCUGCUGACCUAUGGAUUCCUcagcccuaucuauuauuugauuggauagguuuguggguugcauaugucaggagcuucauugcccuaaguuggaucccuuUUUGGAUUGAAGGGAGCUCUAcauucauuug
..((((.((((((((((((..(((((((.((.((((((((((((...(((.(((((.(((((.((((.(.(((.(((.((((((((.........)))))))).))).))).).)))).))))).))))).)))..)))..)))))))))))..)))))))..)))))))))))).))))....

Structure

--uu    a            ga       -c  a         --   uaa   u     G     C    G U   U   c        uua 
    ugag guggagcuccuu  aguccaa  ag ggaucuaac  agg   gau gAGCU CUGAC UAUG A UCC cag ccuaucua   u
    |||| ||||||||||||  |||||||  || |||||||||  |||   ||| ||||| ||||| |||| | ||| ||| ||||||||   u
    acuu cAUCUCGAGGGA  UUAGGUU  uc ccuagguug  ucc   uua uucga gacug auac u ggg guu ggauaggu   u
guuu    a            AG       Uu  -         aa   -cg   c     g     u    g u   u   u        uag 

Annotation confidence Low

Genome context

Unknown

Mature nta-miR159-5p

• Accession: MIMAT0058036
• Description: Nicotiana tabacum nta-miR159-5p mature miRNA
• Sequence: 53 - AGCUGCUGACCUAUGGAUUCCU - 74
• Evidence: experimental ; unknown

Mature nta-miR159-3p

• Accession: MIMAT0024639
• Description: Nicotiana tabacum nta-miR159-3p mature miRNA
• Sequence: 154 - UUUGGAUUGAAGGGAGCUCUA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28