Stem-loop nta-MIR160a

Accession

MI0021330

Description

Nicotiana tabacum nta-MIR160a precursor miRNA

Literature search

5 open access papers mention nta-MIR160a
(11 sentences)

Sequence

119175 reads, 24835.0 reads per million, 40 experiments

aauaugcauaUGCCUGGCUCCCUGUAUGCCAuuugcagagcucaucggaauaccguuggguccccgugaaugGCGUAUGAGGAGCCAAGCAUAUcccggauau
.((((.(((((((.(((((((.((((((((((((((...(((((.(((....))).)))))....)))))))))))))).))))))).))))))...).))))

Structure

a    g ---      C       C              -aga     u   a 
 auau c   auaUGC UGGCUCC UGUAUGCCAuuugc    gcuca cgg a
 |||| |   |||||| ||||||| ||||||||||||||    ||||| |||  
 uaua g   UAUACG ACCGAGG GUAUGCGguaagug    ugggu gcc u
-    g ccc      A       A              cccc     u   a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR160a-5p

• Accession: MIMAT0024640
• Description: Nicotiana tabacum nta-miR160a-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR160a-3p

• Accession: MIMAT0058037
• Description: Nicotiana tabacum nta-miR160a-3p mature miRNA
• Sequence: 73 - GCGUAUGAGGAGCCAAGCAUAU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28