Stem-loop nta-MIR160b

Accession

MI0021331

Description

Nicotiana tabacum nta-MIR160b precursor miRNA

Literature search

4 open access papers mention nta-MIR160b
(10 sentences)

Sequence

120340 reads, 24922.0 reads per million, 40 experiments

gaucugcauaUGCCUGGCUCCCUGUAUGCCAuuugcagagcucaucggaauaccguuggguccccgugaaugGCGUAUGAGGAGCCAAGCAUAUccccgauau
.(((...((((((.(((((((.((((((((((((((...(((((.(((....))).)))))....)))))))))))))).))))))).))))))....)))..

Structure

-g   -ugc      C       C              -aga     u   a 
  auc    auaUGC UGGCUCC UGUAUGCCAuuugc    gcuca cgg a
  |||    |||||| ||||||| ||||||||||||||    ||||| |||  
  uag    UAUACG ACCGAGG GUAUGCGguaagug    ugggu gcc u
ua   cccc      A       A              cccc     u   a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR160b-5p

• Accession: MIMAT0024641
• Description: Nicotiana tabacum nta-miR160b-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR160b-3p

• Accession: MIMAT0058038
• Description: Nicotiana tabacum nta-miR160b-3p mature miRNA
• Sequence: 73 - GCGUAUGAGGAGCCAAGCAUAU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28