Stem-loop nta-MIR160c

Accession

MI0021332

Description

Nicotiana tabacum nta-MIR160c precursor miRNA

Literature search

4 open access papers mention nta-MIR160c
(9 sentences)

Sequence

50719 reads, 11237.0 reads per million, 41 experiments

aacuuggaugUGCCUGGCUCCCUGUAUGCCAcacacuuucaccaauccgcgaguucuuugauuggcugaucagugggugGCGUGCGAGGAGCCAAGCAUAccacauuaua
....(((.(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)))))))).......

Structure

---aacu   a     C       C          a    -u   -      cgcga 
       ugg ugUGC UGGCUCC UGUAUGCCAc cacu  uca ccaauc     g
       ||| ||||| ||||||| |||||||||| ||||  ||| ||||||      
       acc AUACG ACCGAGG GCGUGCGgug guga  agu gguuag     u
auauuac   -     A       A          g    cu   c      uuucu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR160c-5p

• Accession: MIMAT0024642
• Description: Nicotiana tabacum nta-miR160c-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR160c-3p

• Accession: MIMAT0058039
• Description: Nicotiana tabacum nta-miR160c-3p mature miRNA
• Sequence: 80 - GCGUGCGAGGAGCCAAGCAUA - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28