Stem-loop nta-MIR160d

Accession

MI0021333

Description

Nicotiana tabacum nta-MIR160d precursor miRNA

Literature search

4 open access papers mention nta-MIR160d
(8 sentences)

Sequence

4289 reads, 784.0 reads per million, 31 experiments

agaaguuuugUGCCUGGCUCCCUGCAUGCCAcacgcuuucaccaauccgcggguucuuugauuggcugaucagugggugGCGUGCGAGGAGCCAAGCAUAccacauuaua
....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)))))..))......

Structure

--agaa  uu     C       C          a    -u   -      cgcgg 
      gu  ugUGC UGGCUCC UGCAUGCCAc cgcu  uca ccaauc     g
      ||  ||||| ||||||| |||||||||| ||||  ||| ||||||      
      ca  AUACG ACCGAGG GCGUGCGgug guga  agu gguuag     u
auauua  cc     A       A          g    cu   c      uuucu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR160d-5p

• Accession: MIMAT0024643
• Description: Nicotiana tabacum nta-miR160d-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGCAUGCCA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR160d-3p

• Accession: MIMAT0058040
• Description: Nicotiana tabacum nta-miR160d-3p mature miRNA
• Sequence: 80 - GCGUGCGAGGAGCCAAGCAUA - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28