Stem-loop nta-MIR162a

Accession

MI0021334

Description

Nicotiana tabacum nta-MIR162a precursor miRNA

Literature search

1 open access papers mention nta-MIR162a
(8 sentences)

Sequence

119666 reads, 7643.0 reads per million, 43 experiments

uuaagaacacuGGAGGCAGCGGUUCAUCGAUCUGuucccugaaaggcgauaaacaaaauauagcaacaggaaucggUCGAUAAACCUCUGCAUCCAGcgcuuaaccc
(((((..(.(((((.((((.((((.(((((((.(((((.((....((.(((.......))).))..))))))).))))))).)))).)))).))))).))))))...

Structure

---     aa a     G    C    C       U     c  aaag  g   aa 
   uuaag  c cuGGA GCAG GGUU AUCGAUC Guucc ug    gc aua  c
   |||||  | ||||| |||| |||| ||||||| ||||| ||    || |||  a
   aauuc  g GACCU CGUC CCAA UAGCUgg uaagg ac    cg uau  a
ccc     -- c     A    U    A       c     -  --aa  a   aa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR162a-5p

• Accession: MIMAT0058041
• Description: Nicotiana tabacum nta-miR162a-5p mature miRNA
• Sequence: 12 - GGAGGCAGCGGUUCAUCGAUCUG - 34
• Evidence: experimental ; unknown

Mature nta-miR162a-3p

• Accession: MIMAT0024644
• Description: Nicotiana tabacum nta-miR162a-3p mature miRNA
• Sequence: 77 - UCGAUAAACCUCUGCAUCCAG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28