Stem-loop nta-MIR164c

Accession

MI0021338

Description

Nicotiana tabacum nta-MIR164c precursor miRNA

Literature search

2 open access papers mention nta-MIR164c
(6 sentences)

Sequence

12216 reads, 779.0 reads per million, 30 experiments

uuauuuaagcUGGAGAAGCAGGGCACAUGCUaaauuacuugguaacuuugaucuuucaagaauuuUGCAUGUGCUCUUGCUCUCCAGcuuaauucucc
....((((((((((((.(((((((((((((.(((((.(((((.............)))))))))).)))))))).)))))))))))))))))......

Structure

--uuau            A     -        U     a     uaacu 
      uuaagcUGGAGA GCAGG GCACAUGC aaauu cuugg     u
      |||||||||||| ||||| |||||||| ||||| |||||     u
      aauucGACCUCU CGUUC CGUGUACG uuuaa gaacu     g
ccucuu            -     U        U     -     uucua 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR164c-5p

• Accession: MIMAT0024648
• Description: Nicotiana tabacum nta-miR164c-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACAUGCU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR164c-3p

• Accession: MIMAT0058045
• Description: Nicotiana tabacum nta-miR164c-3p mature miRNA
• Sequence: 66 - UGCAUGUGCUCUUGCUCUCCAG - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28