Stem-loop nta-MIR166a

Accession

MI0021339

Description

Nicotiana tabacum nta-MIR166a precursor miRNA

Literature search

3 open access papers mention nta-MIR166a
(11 sentences)

Sequence

4551539 reads, 269156.0 reads per million, 46 experiments

uguuuugaggGGAAUGUUGUCUGGCUCGAGGucacuaacuugauccaauuauuugaacucucuuucccuuuuugagaugucaucuccauuaauuaacaaauagaucaauaguucuugauuggcauuagggaucauggaucaugguuuagugucgUCGGACCAGGCUUCAUUCCCCccaaaauuu
.((((((.((((((((..((((((.((((.(.(((((((((((((((......(((..((((...........))))..)))....................((((..((((.((.....)).))))..)))).))))))).)).)))))).).)))).))))))..)))))))).))))))..

Structure

-u      a        UU      C    G u      -  -       auuauuugaacucucuuucccuuuuugagaugucaucuccauuaauuaacaaaua    aa    u  u 
  guuuug ggGGAAUG  GUCUGG UCGA G cacuaa cu ugaucca                                                       gauc  uagu cu g
  |||||| ||||||||  |||||| |||| | |||||| || |||||||                                                       ||||  |||| || a
  uaaaac CCCCUUAC  CGGACC GGCU c gugauu gg acuaggu                                                       cuag  auua gg u
uu      c        UU      A    g u      u  u       ------------------------------------------------------a    gg    c  u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166a-5p

• Accession: MIMAT0058046
• Description: Nicotiana tabacum nta-miR166a-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature nta-miR166a-3p

• Accession: MIMAT0024649
• Description: Nicotiana tabacum nta-miR166a-3p mature miRNA
• Sequence: 155 - UCGGACCAGGCUUCAUUCCCC - 175
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28