Stem-loop nta-MIR166b

Accession

MI0021340

Description

Nicotiana tabacum nta-MIR166b precursor miRNA

Literature search

3 open access papers mention nta-MIR166b
(5 sentences)

Sequence

4259891 reads, 257274.0 reads per million, 46 experiments

agcuuugaggGGAAUGUUGUCUGGCUCGAAGccauuaucuccucuugauuuaaccuacuucuucuuaacuucaaaaauagcagaacaaacaaucaugagauagugucgUCGGACCAGGCUUCAUUCCCCccaauuugga
....(((.((((((((..((((((.((((.(.(((((((((....(((((........((((.((.............)).)))).....))))).))))))))).).)))).))))))..)))))))).)))......

Structure

--agcu   a        UU      C    A c         cucu     uaaccuac    u  uaacu 
      uug ggGGAAUG  GUCUGG UCGA G cauuaucuc    ugauu        uucu cu     u
      ||| ||||||||  |||||| |||| | |||||||||    |||||        |||| ||     c
      aac CCCCUUAC  CGGACC GGCU c gugauagag    acuaa        aaga ga     a
agguuu   c        UU      A    g u         ---u     ---caaac    c  uaaaa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166b-5p

• Accession: MIMAT0058047
• Description: Nicotiana tabacum nta-miR166b-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAAG - 31
• Evidence: experimental ; unknown

Mature nta-miR166b-3p

• Accession: MIMAT0024650
• Description: Nicotiana tabacum nta-miR166b-3p mature miRNA
• Sequence: 109 - UCGGACCAGGCUUCAUUCCCC - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28