Stem-loop nta-MIR166c

Accession

MI0021341

Description

Nicotiana tabacum nta-MIR166c precursor miRNA

Literature search

3 open access papers mention nta-MIR166c
(7 sentences)

Sequence

4190266 reads, 261115.0 reads per million, 46 experiments

ucuguugaggGGAAUGCUGUCUGGUUCGAAAccauucaccaaaguaugaucaagaguuugauuauuugaaugauuUCGGACCAGGCUUCAUUCCCCccaacucua
...((((.((((((((..(((((((((((((.((((((.......((((((((....)))))))).)))))).)))))))))))))..)))))))).))))....

Structure

-ucu    a        CU             c      ccaaagu        g 
    guug ggGGAAUG  GUCUGGUUCGAAA cauuca       augaucaa a
    |||| ||||||||  ||||||||||||| ||||||       ||||||||  
    caac CCCCUUAC  CGGACCAGGCUuu guaagu       uauuaguu g
aucu    c        UU             a      ------u        u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166c-5p

• Accession: MIMAT0058048
• Description: Nicotiana tabacum nta-miR166c-5p mature miRNA
• Sequence: 11 - GGAAUGCUGUCUGGUUCGAAA - 31
• Evidence: experimental ; unknown

Mature nta-miR166c-3p

• Accession: MIMAT0024651
• Description: Nicotiana tabacum nta-miR166c-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28