Stem-loop nta-MIR166d

Accession

MI0021342

Description

Nicotiana tabacum nta-MIR166d precursor miRNA

Literature search

3 open access papers mention nta-MIR166d
(5 sentences)

Sequence

4551869 reads, 269175.0 reads per million, 46 experiments

uguuuugaggGGAAUGUUGUCUGGCUCGAGGucacuaacuugauccaauuugaacucucuuucccuuuuugagaugucaucuccauuaauuagcaaauagaucaauaguucuugauugacauucucuauuaagagggaucauggaucaugguuuagugucgUCGGACCAGGCUUCAUUCCCCccaaaucuug
.(.((((.((((((((..((((((.((((.(.(((((((((((((((...(((.(((((((.........(((((((((....((..(((((.............)))))..))..))))).))))....))))))).)))))))))).)).)))))).).)))).))))))..)))))))).)))).)...

Structure

--u u    a        UU      C    G u      -  -       auu   a       ucccuuuuu    -     ucuc  uu     gcaaa 
   g uuug ggGGAAUG  GUCUGG UCGA G cacuaa cu ugaucca   uga cucucuu         gaga uguca    ca  aauua     u
   | |||| ||||||||  |||||| |||| | |||||| || |||||||   ||| |||||||         |||| |||||    ||  |||||     a
   c aaac CCCCUUAC  CGGACC GGCU c gugauu gg acuaggu   acu gggagaa         cucu acagu    gu  uugau     g
guu u    c        UU      A    g u      u  u       ---   a       -----uuau    u     --ua  uc     aacua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166d-5p

• Accession: MIMAT0058049
• Description: Nicotiana tabacum nta-miR166d-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature nta-miR166d-3p

• Accession: MIMAT0024652
• Description: Nicotiana tabacum nta-miR166d-3p mature miRNA
• Sequence: 162 - UCGGACCAGGCUUCAUUCCCC - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28