Stem-loop nta-MIR166e

Accession

MI0021343

Description

Nicotiana tabacum nta-MIR166e precursor miRNA

Literature search

3 open access papers mention nta-MIR166e
(5 sentences)

Sequence

4571001 reads, 271224.0 reads per million, 46 experiments

ucaguugaggGGAAUGUUGUCUGGCUCGAGGucaccaacuagauccauaagcuccacuuuaugcuuauuugaacauaaagauuaguuuuguaauauaaagauucguugauuauaugaaaagggguuauggaucaugaguuaguguugUCGGACCAGGCUUCAUUCCCCccaauuguua
.((((((.((((((((..((((((.((((.(.(((.((((.(((((((((.((((.(((((((.((((..((((..........)))).))))))))))).(((((.......)))))..)))))))))))))...)))).))).).)))).))))))..)))))))).))))))...

Structure

--u      a        UU      C    G u   c    --a         g    -------------------a       c    uu    auaa 
   caguug ggGGAAUG  GUCUGG UCGA G cac aacu   gauccauaa cucc                    cuuuaug uuau  gaac    a
   |||||| ||||||||  |||||| |||| | ||| ||||   ||||||||| ||||                    ||||||| ||||  ||||     
   guuaac CCCCUUAC  CGGACC GGCU u gug uuga   cuagguauu gggg                    gaaauau aaug  uuug    g
auu      c        UU      A    g u   a    gua         -    aaaaguauauuaguugcuua       -    -u    auua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166e-5p

• Accession: MIMAT0058050
• Description: Nicotiana tabacum nta-miR166e-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature nta-miR166e-3p

• Accession: MIMAT0024653
• Description: Nicotiana tabacum nta-miR166e-3p mature miRNA
• Sequence: 148 - UCGGACCAGGCUUCAUUCCCC - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28