Stem-loop nta-MIR166f

Accession

MI0021344

Description

Nicotiana tabacum nta-MIR166f precursor miRNA

Literature search

4 open access papers mention nta-MIR166f
(6 sentences)

Sequence

4259913 reads, 257275.0 reads per million, 46 experiments

agcuuugaggGGAAUGUUGUCUGGCUCGAAGccacuaucuccucuugauuuaaccuaguucaagaaguaguaugaguauuuuugucaaaguuguaugaacaaacaauaaugagagauagugucgUCGGACCAGGCUUCAUUCCCCccaauuugga
....(((.((((((((..((((((.((((.(.(((((((((.((((((.(((...))).))))))...................(((..(((((........)))))..)))))))))))).).)))).))))))..)))))))).)))......

Structure

--agcu   a        UU      C    A c         ----------------------------------------------c      u   a 
      uug ggGGAAUG  GUCUGG UCGA G cacuaucuc                                               ucuuga uua  
      ||| ||||||||  |||||| |||| | |||||||||                                               |||||| ||| c
      aac CCCCUUAC  CGGACC GGCU c gugauagag                                               agaacu gau  
agguuu   c        UU      A    g u         aguaauaacaaacaaguauguugaaacuguuuuuaugaguaugauga      u   c 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166f-5p

• Accession: MIMAT0058051
• Description: Nicotiana tabacum nta-miR166f-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUCUGGCUCGAAG - 31
• Evidence: experimental ; unknown

Mature nta-miR166f-3p

• Accession: MIMAT0024654
• Description: Nicotiana tabacum nta-miR166f-3p mature miRNA
• Sequence: 125 - UCGGACCAGGCUUCAUUCCCC - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28