Stem-loop nta-MIR166h

Accession

MI0021346

Description

Nicotiana tabacum nta-MIR166h precursor miRNA

Literature search

3 open access papers mention nta-MIR166h
(6 sentences)

Sequence

8679957 reads, 487050.0 reads per million, 46 experiments

ucuauuguggGGAAUGUUGUUUGGCUCGAGGauucuucaaucuugaucaaauucuuucuauuuuuuauagaucugcauauuaauauagaucuauaauauugaaucaugauuuuggugucgUCGGACCAGGCUUCAUUCCCCUcaaagauugc
(((.(((.((((((((..((((((.((((.(((.((..((((.(((((((..............(((((((((((.((....)).)))))))))))..))).)))).))))..)).))).)))).))))))..)))))))).))))))....

Structure

----   a   u        UU      C    G   u  uc    u    -   auucuuucuauuuu           c  a 
    ucu uug ggGGAAUG  GUUUGG UCGA Gau cu  aauc ugau caa              uuauagaucug au u
    ||| ||| ||||||||  |||||| |||| ||| ||  |||| |||| |||              ||||||||||| ||  
    aga aac CCCCUUAC  CGGACC GGCU cug gg  uuag acua guu              aauaucuagau ua u
cguu   -   U        UU      A    g   u  uu    u    a   ------------au           a  a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR166h-5p

• Accession: MIMAT0058053
• Description: Nicotiana tabacum nta-miR166h-5p mature miRNA
• Sequence: 11 - GGAAUGUUGUUUGGCUCGAGG - 31
• Evidence: experimental ; unknown

Mature nta-miR166h-3p

• Accession: MIMAT0024656
• Description: Nicotiana tabacum nta-miR166h-3p mature miRNA
• Sequence: 121 - UCGGACCAGGCUUCAUUCCCCU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28