Stem-loop nta-MIR167a

Accession

MI0021347

Description

Nicotiana tabacum nta-MIR167a precursor miRNA

Literature search

4 open access papers mention nta-MIR167a
(10 sentences)

Sequence

258628 reads, 10129.0 reads per million, 43 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGGuacgaacaaaguccauuucuuucuauauauaaauauuuucuugcaaagaagaaaagaaaagaaaguccauuuuuucuuaaaauuuugaggucuuuuaauuuccuguuuuggguuugaaauugaagugauauuuucgaaaagaaaauggaauuuuucgaaguuuucuugaaagaaaauauagguaucgucuuucauagguuugguuccaucAGGUCAUCUAGCAGCUUCAAUcacucaccaa
..((((.((((((((((((.((.((((((((((..((((.(((.((............((((..((((((((((...(((((((...(((((.....((((((((((.......((((((((((((((((((((((......))...)))))))))).)))...)))))))))))))))))..)))))....)))))))..))))))))))..))))...........))))).)))).)))))))))))).)))))))))))).))))....

Structure

--uu    a            C  C          ac    a   u  auuucuuucuau    aa          gca       -aaa     gaaag          cuuaaaa       ---   -          ---  gu 
    ugag gguUGAAGCUGC AG AUGAUCUGGu  gaac aag cc            auau  auauuuucuu   aagaaga    gaaaa     uccauuuuuu       uuuugag   guc uuuuaauuuc   cu  u
    |||| |||||||||||| || ||||||||||  |||| ||| ||            ||||  ||||||||||   |||||||    |||||     ||||||||||       |||||||   ||| ||||||||||   ||   
    acuc cUAACUUCGACG UC UACUGGAcua  cuug uuu gg            uaug  uauaaaagaa   uucuuuu    cuuuu     agguaaaaga       aaagcuu   uag gaaguuaaag   gg  u
aacc    a            A  -          -c    g   -  -auacuuucugc    ga          -ag       gaag     ---ua          -------       uua   u          uuu  gu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR167a-5p

• Accession: MIMAT0024657
• Description: Nicotiana tabacum nta-miR167a-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGG - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR167a-3p

• Accession: MIMAT0058054
• Description: Nicotiana tabacum nta-miR167a-3p mature miRNA
• Sequence: 243 - AGGUCAUCUAGCAGCUUCAAU - 263
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28