Stem-loop nta-MIR167b

Accession

MI0021348

Description

Nicotiana tabacum nta-MIR167b precursor miRNA

Literature search

4 open access papers mention nta-MIR167b
(10 sentences)

Sequence

258281 reads, 10091.0 reads per million, 43 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGGuacgaacaaaguccauuucuuugcuauauauauauuuucuugcaaaagaauaaucuugagguguuuuggguuuugaauuuagcuaagugauuuggaaaagaaauuggaauuuugcaaaguuuuuauugaaagagaauauagguagcuuucauggguuugguuccaucAGGUCAUCUAGCAGCUUCAAUcacucaccac
..((((.((((((((((((.((.((((((((((..((((.((((((((......(((((...(((((((((((((((((...(((((((.....(((...((((........))))....)))......))))..)))...)))))))..............)))))))))).)))))....)))))))).)))).)))))))))))).)))))))))))).))))....

Structure

--uu    a            C  C          ac    a        uucuuu     aua          --------------       gaa   --    -gaggu   -uug    uug 
    ugag gguUGAAGCUGC AG AUGAUCUGGu  gaac aaguccau      gcuau   uauauuuucu              ugcaaaa   uaa  ucuu      guu    gguu   a
    |||| |||||||||||| || ||||||||||  |||| ||||||||      |||||   ||||||||||              |||||||   |||  ||||      |||    ||||    
    acuc cUAACUUCGACG UC UACUGGAcua  cuug uuugggua      cgaug   auauaagaga              acguuuu   guu  agaa      uag    ucga   a
cacc    a            A  -          -c    g        --cuuu     --g          aaguuauuuuugaa       aag   aa    aagguu   ugaa    uuu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR167b-5p

• Accession: MIMAT0024658
• Description: Nicotiana tabacum nta-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGG - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR167b-3p

• Accession: MIMAT0058055
• Description: Nicotiana tabacum nta-miR167b-3p mature miRNA
• Sequence: 200 - AGGUCAUCUAGCAGCUUCAAU - 220
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28