Stem-loop nta-MIR167c

Accession

MI0021349

Description

Nicotiana tabacum nta-MIR167c precursor miRNA

Literature search

4 open access papers mention nta-MIR167c
(10 sentences)

Sequence

258304 reads, 10094.0 reads per million, 43 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGGuacgaacaaaguccauuucuugcuauauauauauuuucuugcaaagaauaaucuugagguguuuuggguuugaauuuagcuaagugauuuggaaaagaaauuggaauuuugcaaaguuuuuauugaaagagaauauagguagcuuucauggguuugguuccaucAGGUCAUCUAGCAGCUUCAAUcacucaccac
..((((.((((((((((((.((.((((((((((..((((.((((((((.....(((((...(((((((((((.(((.(((....(((....(((...((((((.(((((..((((.....)))).....))))).)))))).))))))..))).))).))))))))))).)))))....)))))))).)))).)))))))))))).)))))))))))).))))....

Structure

--uu    a            C  C          ac    a        uucuu     aua           g   a   uaau   gagg   uuu      g     ---ag    g 
    ugag gguUGAAGCUGC AG AUGAUCUGGu  gaac aaguccau     gcuau   uauauuuucuu caa gaa    cuu    ugu   ggguuu aauuu     cuaa u
    |||| |||||||||||| || ||||||||||  |||| ||||||||     |||||   ||||||||||| ||| |||    |||    |||   |||||| |||||     |||| g
    acuc cUAACUUCGACG UC UACUGGAcua  cuug uuugggua     cgaug   auauaagagaa guu uuu    gaa    acg   uuuaag uuaaa     gguu a
cacc    a            A  -          -c    g        -cuuu     --g           a   a   --uu   ----   --u      g     gaaaa    u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR167c-5p

• Accession: MIMAT0024659
• Description: Nicotiana tabacum nta-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGG - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR167c-3p

• Accession: MIMAT0058056
• Description: Nicotiana tabacum nta-miR167c-3p mature miRNA
• Sequence: 197 - AGGUCAUCUAGCAGCUUCAAU - 217
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28