Stem-loop nta-MIR167e

Accession

MI0021351

Description

Nicotiana tabacum nta-MIR167e precursor miRNA

Literature search

4 open access papers mention nta-MIR167e
(10 sentences)

Sequence

495159 reads, 29346.0 reads per million, 43 experiments

acuaguaguUGAAGCUGCCAGCAUGAUCUAaacuuuucuaguugcuccguugaggaaagaucaGAUCAUGUAGCAGCAUCACCUGuugauggu
..((((((.(((.(((((..(((((((((...(((((((...((...))...)))))))...))))))))).))))).))).)))))).....

Structure

---ac      u   A     CA         Aaa       agu  c 
     uaguag UGA GCUGC  GCAUGAUCU   cuuuucu   ug  
     |||||| ||| |||||  |||||||||   |||||||   || u
     guuGUC ACU CGACG  UGUACUAGa   gaaagga   gc  
uggua      C   A     -A         cua       guu  c 

Annotation confidence High

Genome context

Unknown

Mature nta-miR167e-5p

• Accession: MIMAT0024661
• Description: Nicotiana tabacum nta-miR167e-5p mature miRNA
• Sequence: 10 - UGAAGCUGCCAGCAUGAUCUA - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR167e-3p

• Accession: MIMAT0058058
• Description: Nicotiana tabacum nta-miR167e-3p mature miRNA
• Sequence: 64 - GAUCAUGUAGCAGCAUCACCUG - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28