Stem-loop nta-MIR168a

Accession

MI0021352

Description

Nicotiana tabacum nta-MIR168a precursor miRNA

Literature search

4 open access papers mention nta-MIR168a
(5 sentences)

Sequence

2102370 reads, 41251.0 reads per million, 46 experiments

ugucucuaauUCGCUUGGUGCAGGUCGGGACuaauucgccgguggcggcggcggcaaucacaacggcggugauuguuauuaaauggagauuagauguacgaaguuaucaacauuuuuuguuuugcggcgaaauuuguCCCGCCUUGCAUCAACUGAAUUGGAgacugc
.((((((((((((.((((((((((.((((((...(((((((...((....))(((((((((.......)))))))))...............((((........))))((((.....))))...)))))))....)))))).)))))))))).))))))))))))...

Structure

--u            C          U      -uaa       ------------------------------------guggcggcggc         aa 
   gucucuaauUCG UUGGUGCAGG CGGGAC    uucgccg                                               ggcaaucac  c
   |||||||||||| |||||||||| ||||||    |||||||                                               |||||||||  g
   cagAGGUUAAGU AACUACGUUC GCCCug    aagcggc                                               uuguuagug  g
cgu            C          C      uuua       guuuuguuuuuuacaacuauugaagcauguagauuagagguaaauua         gc 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR168a-5p

• Accession: MIMAT0024662
• Description: Nicotiana tabacum nta-miR168a-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR168a-3p

• Accession: MIMAT0058059
• Description: Nicotiana tabacum nta-miR168a-3p mature miRNA
• Sequence: 138 - CCCGCCUUGCAUCAACUGAAUUGGA - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28