Stem-loop nta-MIR168b

Accession

MI0021353

Description

Nicotiana tabacum nta-MIR168b precursor miRNA

Literature search

3 open access papers mention nta-MIR168b
(3 sentences)

Sequence

2102187 reads, 41196.0 reads per million, 46 experiments

ugucucuaauUCGCUUGGUGCAGGUCGGGACuaauucgccggcggcaaucacgucggcggugauuauucuacgaagcuuagauguacgaaguuaucaacaauguuccuuugcggcgaaauuuggguCCCGCCUUGCAUCAACUGAAUUGGAgacugc
.((((((((((((.((((((((((.(((((((...(((((((((.......)))))))))((((..((((((...........))).)))...)))).(((..(((((....)).)))..)))))))))).)))))))))).))))))))))))...

Structure

--u            C          U       ------------------------------------------------------------aau         gc 
   gucucuaauUCG UUGGUGCAGG CGGGACu                                                               ucgccggcg  a
   |||||||||||| |||||||||| |||||||                                                               |||||||||  a
   cagAGGUUAAGU AACUACGUUC GCCCugg                                                               ggcggcugc  u
cgu            C          C       guuuaaagcggcguuuccuuguaacaacuauugaagcauguagauucgaagcaucuuauuagu         ac 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR168b-5p

• Accession: MIMAT0024663
• Description: Nicotiana tabacum nta-miR168b-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR168b-3p

• Accession: MIMAT0058060
• Description: Nicotiana tabacum nta-miR168b-3p mature miRNA
• Sequence: 127 - CCCGCCUUGCAUCAACUGAAUUGGA - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28