Stem-loop nta-MIR168c

Accession

MI0021354

Description

Nicotiana tabacum nta-MIR168c precursor miRNA

Literature search

3 open access papers mention nta-MIR168c
(3 sentences)

Sequence

1445194 reads, 29807.0 reads per million, 46 experiments

ggucucucauUCGCUUGGUGCAGGUCGGGACcugccucgccggcgacaaugaugucagcugacggugacggcggcguaccgauaaauauacaugcuguuuggguCCCGCCUUGCAUCAACUGAAUcggagacugc
(((((((.(((((.((((((((((.(((((((((((((((((((((((....)))).))...)))))).)))(((((..............)))))....)))))))).)))))))))).))))).)))))))..

Structure

--       c     C          U        ----------------------------   -      ---  -    a 
  ggucucu auUCG UUGGUGCAGG CGGGACcu                            gcc ucgccg   gc gaca u
  ||||||| ||||| |||||||||| ||||||||                            ||| ||||||   || ||||  
  ucagagg UAAGU AACUACGUUC GCCCuggg                            cgg aguggc   cg cugu g
cg       c     C          C        uuugucguacauauaaauagccaugcgg   c      agu  a    a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR168c-5p

• Accession: MIMAT0024664
• Description: Nicotiana tabacum nta-miR168c-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR168c-3p

• Accession: MIMAT0058061
• Description: Nicotiana tabacum nta-miR168c-3p mature miRNA
• Sequence: 105 - CCCGCCUUGCAUCAACUGAAU - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28