Stem-loop nta-MIR168d

Accession

MI0021355

Description

Nicotiana tabacum nta-MIR168d precursor miRNA

Literature search

3 open access papers mention nta-MIR168d
(3 sentences)

Sequence

ggucucuaauUCGCUUGGUGCAGGUCGGGAAcugacucgccggugacgcuguccgcgccggaaucggcgccuuucauugauauuuuguuuauauguaucgauauuuagagagcucucauuaggacuuauuuguuaguaaaauuuuguuguugaaauuaacuugauauauguauagauaaguagaguguuuaccccugguugguuaaguaauagauauguagagaguguuuacccacgguugguuaaguaauggauauguagagaguucaauuuuuuuaauagauuaguuaugaaugaaagugcgccucgucgauggcuaaguuuguucccgccuugcaucaacugaauuggugaccgc
((((.((((((((.((((((((((.(((((((.((((.((((.(((((...((((...))))...(((((((((((((.(((.((.((((((.....((........))((((((((......((((((((((..(((..(((..((((.......))))..))).)))..))))))))))............((..((((.((((.((((......(((((.....))))).....)))).)))).)))))).......))))))))..........)))))).)).))).)))))))).))))).))))).))))..)))).))))))).)))))))))).)))))))).))))..

Structure

--    u        C          U       u    -c    g     cuguccgcgccggaauc     -        g   u  u      auguaucgauauuuaga        -------------------------------------------------------------------------auuagg          ua   aa   uu    uu 
  gguc cuaauUCG UUGGUGCAGG CGGGAAc gacu  gccg ugacg                 ggcgc cuuucauu aua uu guuuau                 gagcucuc                                                                               acuuauuugu  gua  auu  guug  g
  |||| |||||||| |||||||||| ||||||| ||||  |||| |||||                 ||||| |||||||| ||| || ||||||                 ||||||||                                                                               ||||||||||  |||  |||  ||||  a
  ccag gguuaagu aacuacguuc gcccuug uuga  cggu gcugc                 ccgcg gaaaguaa uau ga uagaua                 cuugagag                                                                               ugaauagaua  uau  uag  caau  a
cg    u        c          c       u    au    a     ----------------u     u        g   u  u      -------auuuuuuuaa        auguauagguaaugaauugguuggcacccauuugugagagauguauagauaaugaauugguugguccccauuugugaga          ug   -a   uu    ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR168d

• Accession: MIMAT0024665
• Description: Nicotiana tabacum nta-miR168d mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28