Stem-loop nta-MIR169c

Accession

MI0021359

Description

Nicotiana tabacum nta-MIR169c precursor miRNA

Literature search

4 open access papers mention nta-MIR169c
(15 sentences)

Sequence

gaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaaugacuuaucggcaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucugaaagacauauauaauucgaggugaagucagugauugaguuucacaaaucacauccaauugaauugcucaugauuugucuagagagucauugcaagaaaagguagggaguggauugcagccaagaaugacuugccgagauguuguagccaaugcaaugacuuauuggcaggucguccuuggcuacauuuuacucuc
(((((((.((.((((((((((((((((((((...(((((.((....((.(((((...((((((((((((.(((((((.((.(((((((((((((..((.(((((((((((...((((((((.((((((((((((..((..((((.......))))..))..))))...))))))))...)))...)))))..)))))).))))).))..))).)))))))))).)).))))))).))))))))))))...))))).))....)).)))))...)))))))))))))))))))).)).)))))))..

Structure

--       u  C                    gau     a  caau  a     uua            c       a  u          -   gc  a     -      gaa     ---   --a        ---    aa  ca    uu 
  gagugga ug AGCCAAGGAUGACUUGCCGA   guugu gc    gc augac   ucggcaggucgu cuuggcu ca uuuacucucu ucu  uc uguaa ggcucu   agaca   uau   uaauucga   ggug  gu  guga  g
  ||||||| || ||||||||||||||||||||   ||||| ||    || |||||   |||||||||||| ||||||| || |||||||||| |||  || ||||| ||||||   |||||   |||   ||||||||   ||||  ||  ||||  a
  cucauuu ac ucgguuccugcuggacgguu   cagua cg    cg uguug   agccguucagua gaaccga gu aggugaggga gga  ag acguu cugaga   ucugu   gua   guuaaguu   cuac  ua  cacu  g
cu       u  a                    auu     a  uaac  a     uag            a       c  u          u   aa  a     a      -ga     uua   cuc        aac    ac  aa    uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR169c

• Accession: MIMAT0024669
• Description: Nicotiana tabacum nta-miR169c mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28