Stem-loop nta-MIR169d

Accession

MI0021360

Description

Nicotiana tabacum nta-MIR169d precursor miRNA

Literature search

4 open access papers mention nta-MIR169d
(15 sentences)

Sequence

4030 reads, 452.0 reads per million, 34 experiments

gaguagauugCAGCCAAGGAUGACUUGCCGAgauguuguagcuaaugcaacgacuuaucgGCAGGUCGUCCUUGGCUACAUuuuacucucu
(((((((.((.((((((((((((((((((((...(((((.((....)).)))))...)))))))))))))))))))).)).)))))))...

Structure

---       u  C                    gau     a  u 
   gaguaga ug AGCCAAGGAUGACUUGCCGA   guugu gc a
   ||||||| || ||||||||||||||||||||   ||||| ||  
   cucauuu AC UCGGUUCCUGCUGGACGgcu   cagca cg a
ucu       U  A                    auu     a  u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169d-5p

• Accession: MIMAT0024670
• Description: Nicotiana tabacum nta-miR169d-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR169d-3p

• Accession: MIMAT0058067
• Description: Nicotiana tabacum nta-miR169d-3p mature miRNA
• Sequence: 61 - GCAGGUCGUCCUUGGCUACAU - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28