Stem-loop nta-MIR169e

Accession

MI0021361

Description

Nicotiana tabacum nta-MIR169e precursor miRNA

Literature search

4 open access papers mention nta-MIR169e
(15 sentences)

Sequence

4230 reads, 591.0 reads per million, 36 experiments

gaguagauugCAGCCAAGGAUGACUUGCCGAgauguuguagcuaaugcaacgacuuaucgGCAGGUCGUCCUUGGCUACauuuuacucucuucugcucauguaagucucugaaaugcauauauauaauucagagguaaaguuaucacacaucacauccaguugaauugcucacaauuugucuagagagucauugcaugaagagguagggaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaaugacuuaucgGCAGGUCGUCCUUGGCUACAUuuuacucu
(((((((.((.((((((((((((((((((((...(((((.((....((.(((((...((((((((((((((((((((.((.(((((((((((((..(((((((((.((((.....(((......((((((((.((.....................))..)))))))).........)))....)))).).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).))....)).)))))...)))))))))))))))))))).)).))))))).

Structure

-       u  C                    gau     a  uaau  a     uua                    A  u          -   gc        - u    gaaau   ---uauaua        -a  uaaaguuau 
 gaguaga ug AGCCAAGGAUGACUUGCCGA   guugu gc    gc acgac   ucgGCAGGUCGUCCUUGGCU Ca uuuacucucu ucu  ucauguaa g cucu     gca         uaauucag  gg         c
 ||||||| || ||||||||||||||||||||   ||||| ||    || |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| | ||||     |||         ||||||||  ||         a
 cucauuu AC UCGGUUCCUGCUGGACGgcu   cagua cg    cg uguug   AGCCGUUCAGUAGGAACCGA gu aggugaggga gga  aguacguu c gaga     ugu         guuaaguu  cc         c
u       U  A                    auu     a  uaac  a     uag                    C  u          u   ga        a u    -gauc   uuaacacuc        ga  uacacuaca 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169e-5p.2

• Accession: MIMAT0058068
• Description: Nicotiana tabacum nta-miR169e-5p.2 mature miRNA
• Sequence: 61 - GCAGGUCGUCCUUGGCUAC - 79
• Evidence: experimental ; unknown

Mature nta-miR169e-5p.1

• Accession: MIMAT0071369
• Description: Nicotiana tabacum nta-miR169e-5p.1 mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR169e-3p.2

• Accession: MIMAT0024671
• Description: Nicotiana tabacum nta-miR169e-3p.2 mature miRNA
• Sequence: 219 - CAGCCAAGGAUGACUUGCCGA - 239
• Evidence: experimental ; Illumina [1]

Mature nta-miR169e-3p.1

• Accession: MIMAT0071370
• Description: Nicotiana tabacum nta-miR169e-3p.1 mature miRNA
• Sequence: 269 - GCAGGUCGUCCUUGGCUACAU - 289
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28