Stem-loop nta-MIR169k

Accession

MI0021367

Description

Nicotiana tabacum nta-MIR169k precursor miRNA

Literature search

4 open access papers mention nta-MIR169k
(15 sentences)

Sequence

4296 reads, 453.0 reads per million, 35 experiments

gaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaaugacuuaucgGCAGGUCGUCCUUGGCUACAUuuuacucucuucugcucauguaaggcucugaaagacauauauaauucgaggugaagucagugauugaguuucacaaaucacauccaauugaauugcucaugauuugucuagagagucauugcaagaaaagguagggaguggauugCAGCCAAGAAUGACUUGCCGagauguuguagccaaugcaaugacuuauugGCAGGUCGUCCUUGGCUACAUuuuacucucu
(((((((.((.((((((((((((((((((((...(((((.((....((.(((((...((((((((((((.(((((((.((.(((((((((((((..((.(((((((((((...((((((((.((((((((((((..((..((((.......))))..))..))))...))))))))...)))...)))))..)))))).))))).))..))).)))))))))).)).))))))).))))))))))))...))))).))....)).)))))...)))))))))))))))))))).)).)))))))...

Structure

---       u  C                    gau     a  caau  a     uua            C       A  U          -   gc  a     -      gaa     ---   --a        ---    aa  ca    uu 
   gagugga ug AGCCAAGGAUGACUUGCCGA   guugu gc    gc augac   ucgGCAGGUCGU CUUGGCU CA uuuacucucu ucu  uc uguaa ggcucu   agaca   uau   uaauucga   ggug  gu  guga  g
   ||||||| || ||||||||||||||||||||   ||||| ||    || |||||   |||||||||||| ||||||| || |||||||||| |||  || ||||| ||||||   |||||   |||   ||||||||   ||||  ||  ||||  a
   cucauuu AC UCGGUUCCUGCUGGACGguu   cagua cg    cg uguug   aGCCGUUCAGUA GAACCGA gu aggugaggga gga  ag acguu cugaga   ucugu   gua   guuaaguu   cuac  ua  cacu  g
ucu       U  A                    auu     a  uaac  a     uag            A       C  u          u   aa  a     a      -ga     uua   cuc        aac    ac  aa    uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169k-5p1

• Accession: MIMAT0024677
• Description: Nicotiana tabacum nta-miR169k-5p1 mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR169k-5p.2

• Accession: MIMAT0071365
• Description: Nicotiana tabacum nta-miR169k-5p.2 mature miRNA
• Sequence: 61 - GCAGGUCGUCCUUGGCUACAU - 81
• Evidence: experimental ; Illumina [1]

Mature nta-miR169k-3p.1

• Accession: MIMAT0058074
• Description: Nicotiana tabacum nta-miR169k-3p.1 mature miRNA
• Sequence: 277 - GCAGGUCGUCCUUGGCUACAU - 297
• Evidence: experimental ; unknown

Mature nta-miR169k-3p.2

• Accession: MIMAT0071366
• Description: Nicotiana tabacum nta-miR169k-3p.2 mature miRNA
• Sequence: 227 - CAGCCAAGAAUGACUUGCCG - 246
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28