Stem-loop nta-MIR169m

Accession

MI0021369

Description

Nicotiana tabacum nta-MIR169m precursor miRNA

Literature search

4 open access papers mention nta-MIR169m
(15 sentences)

Sequence

4291 reads, 472.0 reads per million, 34 experiments

gaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaacgacuuaucgGCAGGUCGUCCUUGGCUACAUuucacucuuuucugcucauguaaggcucuguaagacgcauauauaguucgaggugaagucaguaauugcguuucacaaaucauauccaguugaauugaucuuaauuuguccaaagagucauugcaugaagagguagagaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagcuaaugcaacgacuuaucuGCAGGUCGUCCUUGGCUACAUuuagcucu
((((.((.((.(((((((((((((((((.((...(((((.((....((.(((((...((((((((((((((((((((.((.(((((((((((((..((((((((((((((((.((((((((((..(.(((.....))).)..)))..))))))).))..((((..((.....))..))))..............)))))).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).))....)).)))))...)).))))))))))))))))).)).)).)))).

Structure

-    g  u  C                 C  gau     a  caau  a     uua                    A  U          -   gc        -      -------------------------------------  a       --   au g   g 
 gagu ga ug AGCCAAGGAUGACUUGC GA   guugu gc    gc acgac   ucgGCAGGUCGUCCUUGGCU CA uucacucuuu ucu  ucauguaa ggcucu                                     gu agacgca  uau  a uuc a
 |||| || || ||||||||||||||||| ||   ||||| ||    || |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| ||||||                                     || |||||||  |||  | ||| g
 cucg uu AC UCGGUUCCUGCUGGACG cu   cagca cg    cg uguug   AGCCGUUCAGUAGGAACCGA gu aggugagaga gga  aguacguu cugaga                                     ca uuugcgu  aug  u aag g
u    a  U  A                 u  auu     a  uaau  a     uag                    C  u          u   ga        a      aaccuguuuaauucuaguuaaguugaccuauacuaaa  c       ua   ac g   u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169m-5p.2

• Accession: MIMAT0058076
• Description: Nicotiana tabacum nta-miR169m-5p.2 mature miRNA
• Sequence: 61 - GCAGGUCGUCCUUGGCUACAU - 81
• Evidence: experimental ; unknown

Mature nta-miR169m-5p.1

• Accession: MIMAT0071367
• Description: Nicotiana tabacum nta-miR169m-5p.1 mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR169m-3p.2

• Accession: MIMAT0024679
• Description: Nicotiana tabacum nta-miR169m-3p.2 mature miRNA
• Sequence: 229 - CAGCCAAGGAUGACUUGCCGA - 249
• Evidence: experimental ; Illumina [1]

Mature nta-miR169m-3p.1

• Accession: MIMAT0071368
• Description: Nicotiana tabacum nta-miR169m-3p.1 mature miRNA
• Sequence: 279 - GCAGGUCGUCCUUGGCUACAU - 299
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28