Stem-loop nta-MIR169o

Accession

MI0021370

Description

Nicotiana tabacum nta-MIR169o precursor miRNA

Literature search

4 open access papers mention nta-MIR169o
(15 sentences)

Sequence

3984 reads, 403.0 reads per million, 34 experiments

aacgacuuaucgGCAGGUCGUCCUUGGCUACAUuucacucuuuucugcucauguaaggcucuguaagacgcauauauaguucgaggugaagucaguaauugcguuucacaaaucauauccaguugaauugaucuuaauuuguccaaagagucauugcaugaagagguagagaguggauugCAGCCAAGGAUGACUUGCCGAgauguugua
.(((((...((((((((((((((((((((.((.(((((((((((((..((((((((((((((((.((((((((((..(.(((.....))).)..)))..))))))).))..((((..((.....))..))))..............)))))).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).

Structure

a     uua                    A  U          -   gc        -      -------------------------------------  a       --   au g   g 
 acgac   ucgGCAGGUCGUCCUUGGCU CA uucacucuuu ucu  ucauguaa ggcucu                                     gu agacgca  uau  a uuc a
 |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| ||||||                                     || |||||||  |||  | ||| g
 uguug   AGCCGUUCAGUAGGAACCGA gu aggugagaga gga  aguacguu cugaga                                     ca uuugcgu  aug  u aag g
a     uag                    C  u          u   ga        a      aaccuguuuaauucuaguuaaguugaccuauacuaaa  c       ua   ac g   u 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169o-5p

• Accession: MIMAT0058077
• Description: Nicotiana tabacum nta-miR169o-5p mature miRNA
• Sequence: 13 - GCAGGUCGUCCUUGGCUACAU - 33
• Evidence: experimental ; unknown

Mature nta-miR169o-3p

• Accession: MIMAT0024680
• Description: Nicotiana tabacum nta-miR169o-3p mature miRNA
• Sequence: 181 - CAGCCAAGGAUGACUUGCCGA - 201
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28