Stem-loop nta-MIR169q

Accession

MI0021372

Description

Nicotiana tabacum nta-MIR169q precursor miRNA

Literature search

4 open access papers mention nta-MIR169q
(15 sentences)

Sequence

3983 reads, 422.0 reads per million, 35 experiments

gaguggauugCAGCCAAGGAUGACUUGCCGggauguuguagucaaugcaacgacuuaucgguaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucuauaagauauauauauaauucgaggugaagucaguaauuguuucacaaauuacauccuuuuuuaauugcucauaauuugucuagagagucauugcaugaaaaaguagcgagugaauugcagccaaggagacuugucaagauguugcagccaaugcaacgacuuaucgGCAGGUCGUCCUUGGCUACAUuucacucucu
(((((((.((.((((((((((((((((((((..(((((((.....(((((((.(((...((((((((.(((((((((.((.(((((((.((.((..((((((((((((((...(((((.((..............((((...((((((........))))))...))))..............)).)))))..)))))).))))))))...)).)).))))))).)).)))))))))))))))))))).))))))).....))))))).....)))))))))))))))))))).)).)))))))...

Structure

---       u  C                    ---ga       gucaa       a   auc        g         a  u       u  u  -gc        -      aua     u  auauaauucgaggu    uca      guu 
   gagugga ug AGCCAAGGAUGACUUGCCGg     uguugua     ugcaacg cuu   gguagguc uccuuggcu ca uuuacuc cu cu   ucauguaa ggcucu   agaua au              gaag   guaauu   u
   ||||||| || ||||||||||||||||||||     |||||||     ||||||| |||   |||||||| ||||||||| || ||||||| || ||   |||||||| ||||||   ||||| ||              ||||   ||||||    
   cucacuu AC UCGGUUCCUGCUGGACGgcu     gcaacgu     acguugu gaa   cuguucag aggaaccga gu aagugag ga ga   aguacguu cugaga   ucugu ua              uuuc   cauuaa   c
ucu       U  A                    auuca       aaccg       a   ---        -         c  u       c  u  aaa        a      -ga     u  auacucguuaauuu    cua      aca 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169q-5p

• Accession: MIMAT0024682
• Description: Nicotiana tabacum nta-miR169q-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCG - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR169q-3p

• Accession: MIMAT0058079
• Description: Nicotiana tabacum nta-miR169q-3p mature miRNA
• Sequence: 277 - GCAGGUCGUCCUUGGCUACAU - 297
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28