Stem-loop nta-MIR169r

Accession

MI0021373

Description

Nicotiana tabacum nta-MIR169r precursor miRNA

Literature search

4 open access papers mention nta-MIR169r
(15 sentences)

Sequence

3987 reads, 422.0 reads per million, 35 experiments

gaguggauugCAGCCAAGGAUGACUUGCCGggauguuguagucaaugcaacgacuuaucgguaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucuauaagauauauauauaauucgaggugaagucaguaauuguuucacaaauuacauccaguugaauugcucauaauuugucuagagagucauugcaugaagagguagcgagugaauugcagccaaggagacuugucaagauguugcagccaaugcaacgacuuaucgGCAGGUCGUCCUUGGCUACAUuucacucucu
(((((((.((.((((((((((((((((((((...(((((.((....)).)))))...)))))))))))))))))))).)).))))))).(((((..((((((((((((((...(((((..(((.((((((((...((.....((((((........)))))).))...))))))))...)))...)))))..)))))).))))))))))))).((.(((((((.((.((((((((((((((((((((.(((((((.....))))))).)))...)))))))).))))))))).)).))))))).))

Structure

gaguggauugCAGCCAAGGAUGACUUGCCGggauguuguagucaaugcaacgacuuaucgguaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucuauaagauauauauauaauucgaggugaagucaguaauuguuucacaaauuacauccaguugaauugcucauaauuugucuagagagucauugcaugaagaggu  c       u  c         -        ---   a       g 
                                                                                                                                                                                                                     ag gagugaa ug agccaagga gacuuguc   aag uguugca c
                                                                                                                                                                                                                     || ||||||| || ||||||||| ||||||||   ||| ||||||| c
                                                                                                                                                                                                                     uc cucacuu AC UCGGUUCCU CUGGACGg   uuc gcaacgu a
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------  u       U  A         G        cua   a       a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169r-5p

• Accession: MIMAT0024683
• Description: Nicotiana tabacum nta-miR169r-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCG - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR169r-3p

• Accession: MIMAT0058080
• Description: Nicotiana tabacum nta-miR169r-3p mature miRNA
• Sequence: 276 - GCAGGUCGUCCUUGGCUACAU - 296
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28