Stem-loop nta-MIR169s

Accession

MI0021374

Description

Nicotiana tabacum nta-MIR169s precursor miRNA

Literature search

4 open access papers mention nta-MIR169s
(15 sentences)

Sequence

3725 reads, 474.0 reads per million, 32 experiments

caacuuaucgGCAGGUCGUCCUUGGCUACAUuucacucucuucugcucauguaaggcuuuguaagacgcauauauaguucgaggugaagucagugauugcguuucacaaaucacauccaguugaauugcucauaauuugucuagagagucauugcaugaagagguagggaguggauugCAGCCAAGGAUGACUUGCCGggauguuguag
((((...((((((((((((((((((((.((.(((((((((((((..((((((((((((((.((.((((..(((.((((((((((((..((..((((.......))))..))..))))...))))))))...)))...)))))).)))))).))))))))..))).)))))))))).)).))))))))))))))))))))...))))...

Structure

---    uua                    A  U          -   gc        -      g  a    -ca   --a        ---    aa  ca    uu 
   caac   ucgGCAGGUCGUCCUUGGCU CA uucacucucu ucu  ucauguaa ggcuuu ua gacg   uau   uaguucga   ggug  gu  guga  g
   ||||   |||||||||||||||||||| || |||||||||| |||  |||||||| |||||| || ||||   |||   ||||||||   ||||  ||  ||||  c
   guug   gGCCGUUCAGUAGGAACCGA gu aggugaggga gga  aguacguu cugaga au cugu   aua   guuaaguu   cuac  ua  cacu  g
gau    uag                    C  u          u   ga        a      g  -    uua   cuc        gac    ac  aa    uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169s-5p

• Accession: MIMAT0058081
• Description: Nicotiana tabacum nta-miR169s-5p mature miRNA
• Sequence: 11 - GCAGGUCGUCCUUGGCUACAU - 31
• Evidence: experimental ; unknown

Mature nta-miR169s-3p

• Accession: MIMAT0024684
• Description: Nicotiana tabacum nta-miR169s-3p mature miRNA
• Sequence: 179 - CAGCCAAGGAUGACUUGCCG - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28