Stem-loop nta-MIR169t

Accession

MI0021375

Description

Nicotiana tabacum nta-MIR169t precursor miRNA

Literature search

4 open access papers mention nta-MIR169t
(15 sentences)

Sequence

19808 reads, 431.0 reads per million, 34 experiments

cuuuguuuagUAGCCAAGGAUGACUUGCCUUucaucaaugcauacaaaaugggagcaaaaaccccuuuugaugguuggaaugcgUGGCAAGCAUCUUUGGCGACUUgacgagcuc
.((((((.(((.((((((((((.((((((...(((((((.(((.(((((.(((........))).))))))))))))..)))...)))))))))))))))).))).))))))...

Structure

--c      u   A          A      UUu   --    g   a     u   agc 
   uuuguu agU GCCAAGGAUG CUUGCC   cau  caau cau caaaa ggg   a
   |||||| ||| |||||||||| ||||||   |||  |||| ||| ||||| |||    
   gagcag UCA CGGUUUCUAC GAACGG   gua  guug gua guuuu ccc   a
cuc      U   G          -      Ugc   ag    -   -     c   aaa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR169t-5p

• Accession: MIMAT0024685
• Description: Nicotiana tabacum nta-miR169t-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR169t-3p

• Accession: MIMAT0058082
• Description: Nicotiana tabacum nta-miR169t-3p mature miRNA
• Sequence: 85 - UGGCAAGCAUCUUUGGCGACUU - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28