Stem-loop nta-MIR171a

Accession

MI0021376

Description

Nicotiana tabacum nta-MIR171a precursor miRNA

Literature search

5 open access papers mention nta-MIR171a
(12 sentences)

Sequence

56591 reads, 4329.0 reads per million, 44 experiments

auacacgagaUAUUGGUGCGGUUCAAUGAGAaagcaguacucgacaaauuuugacucuacuuuuUGAUUGAGCCGUGCCAAUAUCacguguagca
.((((((.(((((((((((((((((((.((((((.((...((((......))))..)).)))))).))))))))))))))))))).))))))...

Structure

--a      a                   G      c  uac    ca 
   uacacg gaUAUUGGUGCGGUUCAAU AGAaag ag   ucga  a
   |||||| ||||||||||||||||||| |||||| ||   ||||   
   augugc CUAUAACCGUGCCGAGUUA Uuuuuc uc   aguu  a
acg      a                   G      a  -uc    uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR171a-5p

• Accession: MIMAT0024686
• Description: Nicotiana tabacum nta-miR171a-5p mature miRNA
• Sequence: 11 - UAUUGGUGCGGUUCAAUGAGA - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR171a-3p

• Accession: MIMAT0058083
• Description: Nicotiana tabacum nta-miR171a-3p mature miRNA
• Sequence: 65 - UGAUUGAGCCGUGCCAAUAUC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28